Terkko Navigator / RNA

Frame-shifted proteins of a given gene are unlikely to retain the same function [LETTER TO THE EDITOR]

A hybrid deep clustering approach for robust cell type profiling using single-cell RNA-seq data [BIOINFORMATIC]

Meta-analysis of transcriptomic variation in T-cell populations reveals both variable and consistent signatures of gene expression and splicing [BIOINFORMATIC]

Inactivation of fission yeast Erh1 de-represses pho1 expression: evidence that Erh1 is a negative regulator of prt lncRNA termination [REPORT]

Studies with recombinant U7 snRNP demonstrate that CPSF73 is both an endonuclease and a 5'-3' exonuclease [ARTICLE]

Prefoldin-like Bud27 influences the transcription of ribosomal components and ribosome biogenesis in Saccharomyces cerevisiae [ARTICLE]

Pdc2/Pat1 increases the range of decay factors and RNA bound by the Lsm1-7 complex [ARTICLE]

Allosteric regulation of U1 snRNP by splicing regulatory proteins controls spliceosomal assembly [ARTICLE]

Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes [ARTICLE]

Elimination of Calm1 long 3'-UTR mRNA isoform by CRISPR-Cas9 gene editing impairs dorsal root ganglion development and hippocampal neuron activation in mice [ARTICLE]

Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis [ARTICLE]

Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein [ARTICLE]

Origin, conservation, and loss of alternative splicing events that diversify the proteome in Saccharomycotina budding yeasts [ARTICLE]

Nuclease-mediated depletion biases in ribosome footprint profiling libraries [METHOD]

Validation strategies for antibodies targeting modified ribonucleotides [METHOD]

Revisiting the window of opportunity for cotranscriptional splicing in budding yeast [COMMENTARY]

RNA secondary structures in Dscam1 mutually exclusive splicing: unique evolutionary signature from the midge [LETTER TO THE EDITOR]

Specificity in the biosynthesis of the universal tRNA nucleoside N6-threonylcarbamoyl adenosine (t6A)--TsaD is the gatekeeper [ARTICLE]

Repeat RNAs associate with replication forks and post-replicative DNA [ARTICLE]

Parallel poly(A) homo- and hetero-duplex formation detection with an adapted DNA nanoswitch technique [ARTICLE]

tRNA elbow modifications affect the tRNA pseudouridine synthase TruB and the methyltransferase TrmA [ARTICLE]

Tob2 phosphorylation regulates global mRNA turnover to reshape transcriptome and impact cell proliferation [ARTICLE]

Dual-level autoregulation of the E. coli DeaD RNA helicase via mRNA stability and Rho-dependent transcription termination [ARTICLE]

Influenza A virus utilizes noncanonical cap-snatching to diversify its mRNA/ncRNA [ARTICLE]

Different views of the dynamic landscape covered by the 5'-hairpin of the 7SK small nuclear RNA [ARTICLE]

Adaptor protein RapZ activates endoribonuclease RNase E by protein-protein interaction to cleave a small regulatory RNA [ARTICLE]

Chemical crosslinking enhances RNA immunoprecipitation for efficient identification of binding sites of proteins that photo-crosslink poorly with RNA [ARTICLE]

An evolutionarily conserved RNA structure in the functional core of the lincRNA Cyrano [ARTICLE]

Pseudouridine-mediated stop codon readthrough in S. cerevisiae is sequence context-independent [ARTICLE]

A combinatorially regulated RNA splicing signature predicts breast cancer EMT states and patient survival [ARTICLE]

Yeast pentatricopeptide protein Dmr1 (Ccm1) binds a repetitive AU-rich motif in the small subunit mitochondrial ribosomal RNA [ARTICLE]

Highly specific, multiplexed isothermal pathogen detection with fluorescent aptamer readout [ARTICLE]

Detection and quantification of glycosylated queuosine modified tRNAs by acid denaturing and APB gels [METHOD]

Misuse of RPKM or TPM normalization when comparing across samples and sequencing protocols [REVIEW]

Aminoacyl-tRNA synthetases [REVIEW]

RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look [BIOINFORMATICS]

A bacterial riboswitch class senses xanthine and uric acid to regulate genes associated with purine oxidation [REPORT]

Requirement for cleavage factor IIm in the control of alternative polyadenylation in breast cancer cells [REPORT]

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers [ARTICLE]

Antisense targeting of decoy exons can reduce intron retention and increase protein expression in human erythroblasts [ARTICLE]

Metabolic labeling of RNA uncovers the contribution of transcription and decay rates on hypoxia-induced changes in RNA levels [ARTICLE]

A robust and versatile method for production and purification of large-scale RNA samples for structural biology [ARTICLE]

5-methylcytosine modification of an Epstein-Barr virus noncoding RNA decreases its stability [ARTICLE]

Nop9 recognizes structured and single-stranded RNA elements of preribosomal RNA [ARTICLE]

Phased nucleotide inserts for sequencing low-diversity RNA samples from in vitro selection experiments [METHOD]

Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads [METHOD]

Overcoming the bottleneck to widespread testing: a rapid review of nucleic acid testing approaches for COVID-19 detection [REVIEW]

Splicing conservation signals in plant long noncoding RNAs [BIOINFORMATICS]

Evaluating DCA-based method performances for RNA contact prediction by a well-curated data set [BIOINFORMATICS]

An ancient evolutionary connection between Ribonuclease A and EndoU families [BIOINFORMATICS]