Terkko Navigator / PLoS Computational Biology

The metastable brain associated with autistic-like traits of typically developing individuals

Genome-wide analysis of lncRNA stability in human

Identification of long regulatory elements in the genome of <i>Plasmodium falciparum</i> and other eukaryotes

Accurate cancer phenotype prediction with AKLIMATE, a stacked kernel learner integrating multimodal genomic data and pathway knowledge

Supercoiled DNA and non-equilibrium formation of protein complexes: A quantitative model of the nucleoprotein ParB<i>S</i> partition complex

A new model for simultaneous dimensionality reduction and time-varying functional connectivity estimation

Linking statistical shape models and simulated function in the healthy adult human heart

Accurate contact-based modelling of repeat proteins predicts the structure of new repeats protein families

Transmission delays and frequency detuning can regulate information flow between brain regions

VolPy: Automated and scalable analysis pipelines for voltage imaging datasets

Differential contributions of synaptic and intrinsic inhibitory currents to speech segmentation via flexible phase-locking in neural oscillators

Sperm chemotaxis in marine species is optimal at physiological flow rates according theory of filament surfing

Mistakes can stabilise the dynamics of rock-paper-scissors games

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism

Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection

Inhibitory neurons exhibit high controlling ability in the cortical microconnectome

Behavioral discrimination and time-series phenotyping of birdsong performance

Correction: Contrasting mechanisms for hidden hearing loss: Synaptopathy vs myelin defects

Avoiding the bullies: The resilience of cooperation among unequals

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes

Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion

Correction: Ten simple rules to colorize biological data visualization

Machine learning-based investigation of the cancer protein secretory pathway

Temporal dynamics of a CSF1R signaling gene regulatory network involved in epilepsy

ORN: Inferring patient-specific dysregulation status of pathway modules in cancer with OR-gate Network

Computation of the electroencephalogram (EEG) from network models of point neurons

Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor

Building blocks and blueprints for bacterial autolysins

Individual differences in the perception of probability

Computational modelling of muscle fibre operating ranges in the hindlimb of a small ground bird (<i>Eudromia elegans</i>, with implications for modelling locomotion in extinct species

Using Hawkes Processes to model imported and local malaria cases in near-elimination settings

Computational epitope map of SARS-CoV-2 spike protein

Constraints on the deformation of the vibrissa within the follicle

Correction: Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits

Personalized computational model quantifies heterogeneity in postprandial responses to oral glucose challenge

CODON—Software to manual curation of prokaryotic genomes

Modeling the circadian regulation of the immune system: Sexually dimorphic effects of shift work

Orchestrating privacy-protected big data analyses of data from different resources with R and DataSHIELD

Apoptosis mapping in space and timee of 3D tumor ecosystems reveals transmissibility of cytotoxic cancer death

Collaborating with our community to increase code sharing

Estimating incidence of infection from diverse data sources: Zika virus in Puerto Rico, 2016

On realized serial and generation intervals given control measures: The COVID-19 pandemic case

Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification

Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach

How does Sec63 affect the conformation of Sec61 in yeast?

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model

Tuned inhibition in perceptual decision-making circuits can explain seemingly suboptimal confidence behavior

Vocalization with semi-occluded airways is favorable for optimizing sound production

Graph of graphs analysis for multiplexed data with application to imaging mass cytometry

Mathematical modeling of the <i>Candida albicans</i> yeast to hyphal transition reveals novel control strategies