Terkko Navigator / Molecular ecology resources

Pedigree reconstruction and distant pairwise relatedness estimation from genome sequence data: A demonstration in a population of rhesus macaques (Macaca mulatta)

Chromosome‐level assembly of Southern catfish (Silurus meridionalis) provides insights into visual adaptation to the nocturnal and benthic lifestyles

Validated removal of nuclear pseudogenes and sequencing artefacts from mitochondrial metabarcode data

SambaR: an R package for fast, easy and reproducible population‐genetic analyses of biallelic SNP datasets

New model species for Arctic‐alpine plant molecular ecology

The discernible and hidden effects of clonality on the genotypic and genetic states of populations: Improving our estimation of clonal rates

A chromosome‐level genome assembly for the Tertiary relict plant Tetracentron sinense Oliv. (Trochodendraceae)

Model‐based genotype and ancestry estimation for potential hybrids with mixed‐ploidy

The influence of intraspecific sequence variation during DNA metabarcoding: A case study of eleven fungal species

Corrigendum

pixy: Unbiased estimation of nucleotide diversity and divergence in the presence of missing data

A multi‐tiered sequence capture strategy spanning broad evolutionary scales: Application for phylogenetic and phylogeographic studies of orchids

Complex genetic admixture histories reconstructed with Approximate Bayesian Computation

DILS: Demographic Inferences with Linked Selection by using ABC

A high‐quality genome assembly of the eggplant provides insights into the molecular basis of disease resistance and chlorogenic acid synthesis

Customize and get the most out of your reduced‐representation sequencing experiment with the new simulation software RADinitio

Contaminations contaminate common databases

The Ocean Barcode Atlas: a web service to explore the biodiversity and biogeography of marine organisms.

A reference‐free approach to analyze RADseq data using standard Next Generation Sequencing toolkits

A large genome with chromosome‐scale assembly sheds light on the evolutionary success of a true toad (Bufo gargarizans)

Genotype by Sequencing: an alternative new method to amplicon metabarcoding and shotgun metagenomics for the assessment of eukaryote biodiversity

Long read sequencing of Toona sinensis (A. Juss) Roem: a chromosome‐level reference genome for the Meliaceae family

Effective double‐digest RAD sequencing and genotyping despite large genome size

Error, noise and bias in de novo transcriptome assemblies

The changing face of genome assemblies: guidance on achieving high‐quality reference genomes

Chromosome‐level reference genome assembly provides insights into aroma biosynthesis in passion fruit (Passiflora edulis)

Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: Strengths and pitfalls

Hybridization capture of larch (Larix Mill) chloroplast genomes from sedimentary ancient DNA reveals past changes of Siberian forest

Predicting amphibian intraspecific diversity with machine learning: Challenges and prospects for integrating traits, geography, and genetic data

Chromosome‐level genome assembly of the aphid parasitoid Aphidius gifuensis using Oxford Nanopore sequencing and Hi‐C technology

Sequencing platform shifts provide opportunities but pose challenges for combining genomic datasets

Identification of determinants of pollen donor fecundity using the hierarchical neighborhood model

SCycDB: A Curated Functional Gene Database for Metagenomic Profiling of Sulfur Cycling Pathways

RepeatProfiler: a pipeline for visualization and comparative analysis of repetitive DNA profiles

Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics

Biased assessment of ongoing admixture using STRUCTURE in the absence of reference samples

Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass

A novel workflow to improve genotyping of multigene families in wildlife species: An experimental set‐up with a known model system

A Comprehensive Analysis Comparing Linear and Generalized Linear Models in Detecting Adaptive SNPs

ASAP: assemble species by automatic partitioning

Maximizing the acquisition of unique reads in non‐invasive capture sequencing experiments

Reference genome and demographic history of the most endangered marine mammal, the vaquita

Whole genome sequencing of silver carp (Hypophthalmichthys molitrix) and bighead carp (Hypophthalmichthys nobilis) provide novel insights into their evolution and speciation

Chromosome level assembly reveals a unique immune gene organization and signatures of evolution in the common pheasant

Characterisation of reproductive gene diversity in the endangered Tasmanian devil

Benchmarking DNA methylation assays in a reef‐building coral

The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic

msGBS: A new high‐throughput approach to quantify the relative species abundance in root samples of multispecies plant communities

Development of a highly efficient 50K SNP genotyping array for the large and complex genome of Norway spruce (Picea abies L. Karst) by whole genome re‐sequencing and its transferability to other spruce species

Genome‐scale target capture of mitochondrial and nuclear environmental DNA from water samples