Terkko Navigator / Infection, Genetics and Evolution

Genomic epizootiology of a Brucella abortus outbreak in Northern Ireland (1997–2012)

First insight into phylogeography of Mycobacterium bovis and M. caprae from cattle in Bulgaria

Phylogenetic diversity of Mycobacterium tuberculosis in two geographically distinct locations in Botswana – The Kopanyo Study

Leopardus wiedii Papillomavirus type 1, a novel papillomavirus species in the tree ocelot, suggests Felidae Lambdapapillomavirus polyphyletic origin and host-independent evolution

Microsatellite typing of Aedes albopictus (Diptera: Culicidae) populations from Germany suggests regular introductions

Detection and complete genome characterization of a novel RNA virus related to members of the Hepe-Virga clade in bird species, hoopoe (Upupa epops)

Investigation of a rapidly spreading tuberculosis outbreak using whole-genome sequencing

Liver virome of healthy pigs reveals diverse small ssDNA viral genomes

Acarbose, as a potential drug, effectively blocked the dynamic metastasis of EV71 from the intestine to the whole body

First molecular identification of the tapeworm Mesocestoides litteratus from an Italian wall lizard (Podarcis siculus)

Bioinformatic analysis of post-transmission viral readaptation in Argentine patients with acute HIV-1 infection

High-throughput sequencing (HTS) for the analysis of viral populations

Identification of Enterocytozoon bieneusi and Cryptosporidium spp. in farmed wild boars (Sus scrofa) in Beijing, China

Risk association of BST2 gene variants with disease progression in HIV-1 infected Indian cohort

Complete genome sequences of the first parechoviruses A associated with sporadic pediatric acute gastroenteritis in Russia

Virulence traits and expression of bstA, fliC and sopE2 in Salmonella Dublin strains isolated from humans and animals in Brazil

An improved and low-cost protocol for high-quality DNA isolation for the Chagas disease vectors

Insect-specific flaviviruses and densoviruses, suggested to have been transmitted vertically, found in mosquitoes collected in Angola: Genome detection and phylogenetic characterization of viral sequences

Detection of three independently-generated DS-1-like G9P[8] reassortant rotavirus A strains during the G9P[8] dominance in Vietnam, 2016–2018

RNA sequencing analyses of gene expressions in a canine macrophages cell line DH82 infected with canine distemper virus

Innate and adaptive immunity in wild rodents spontaneously and experimentally infected with the tick-borne encephalitis virus

Multigene typing and phylogenetic analysis of Fasciola from endemic foci in Iran

Joint selection for two malaria resistance mutations in a south-west Colombian population

Genome-wide screening and in silico gene knockout to predict potential candidates for drug designing against Candida albicans

Population genetic structure analysis of thrombospondin-related adhesive protein (TRAP) as a vaccine candidate antigen in worldwide Plasmodium falciparum isolates

Immunoinformatics guided rational design of a next generation multi epitope based peptide (MEBP) vaccine by exploring Zika virus proteome

Hepatic TLR4, MBL and CRP gene expression levels are associated with chronic hepatitis C

Comparative genomic analysis and identification of pathogenicity islands of hypervirulent ST-17 Streptococcus agalactiae Brazilian strain

Sequencing of ZIKV genomes directly from Ae. aegypti and Cx. quinquefasciatus mosquitoes collected during the 2015–16 epidemics in Recife

CRISPR elements and their association with antimicrobial resistance and virulence genes among vancomycin-resistant and vancomycin-susceptible enterococci recovered from human and food sources

Epitope promiscuity and population coverage of Mycobacterium tuberculosis protein antigens in current subunit vaccines under development

Acute enterovirus infections significantly alter host cellular DNA methylation status

Molecular epidemiology of infectious bronchitis virus in Poland from 1980 to 2017

Molecular epidemiological study of multidrug-resistant tuberculosis isolated from sputum samples in Eastern Cape, South Africa

Pre-vaccine rotavirus surveillance in Buenos Aires, Argentina. Characterization of an emergent G1P[8] strain associated to fatal cases in 2014

Designing and evaluation of an antibody-targeted chimeric recombinant vaccine encoding Shigella flexneri outer membrane antigens

Mechanism of eravacycline resistance in Acinetobacter baumannii mediated by a deletion mutation in the sensor kinase adeS, leading to elevated expression of the efflux pump AdeABC

Recurrent tuberculosis in patients infected with the predominant Mycobacterium tuberculosis outbreak strain in Denmark. New insights gained through whole genome sequencing

Genomic features, whole-genome phylogenetic and comparative genomic analysis of extreme-drug-resistant ventilator-associated-pneumonia Acinetobacter baumannii strain in a Vietnam hospital

Phylogenetic analysis of near full-length sequences of the Desmodus rotundus genetic lineage of rabies virus

Molecular phylogeny of Megalobatrachonema (Nematoda: Ascaridida), with description of a new species based on morphological and molecular evidence

Evolutionary analysis of the ON1 genotype of subtype a respiratory syncytial virus in Riyadh during 2008–16

Occult hepatitis C virus infection in hemophilia patients and its correlation with interferon lambda 3 and 4 polymorphisms

An optimized genomic VCF workflow for precise identification of Mycobacterium tuberculosis cluster from cross-platform whole genome sequencing data

Vaginal dysbiosis dominated by miscellaneous bacteria correlates with more severe clinical symptoms

Prezygotic isolation confirms the exclusion of Triatoma melanocephala, T. vitticeps and T. tibiamaculata of the T. brasiliensis subcomplex (Hemiptera, Triatominae)

Characterization of rotavirus possessing a DS-1-like VP3 gene from pigs in Brazil: Evidence for zooanthroponotic transmission

Association of POR and PPARα polymorphisms with risk of anti-tuberculosis drug-induced liver injury in Western Chinese Han population

Genomic epidemiology of methicillin-resistant Staphylococcus sciuri carrying a SCCmec-mecC hybrid element

Longitudinal dynamics of herd-level Mycobacterium bovis MLVA type surveillance in cattle in Northern Ireland 2003–2016