Terkko Navigator / Genome Research

Sense-antisense miRNA pairs constitute an elaborate reciprocal regulatory circuit [RESEARCH]

Dynamic effects of interacting genes underlying rice flowering-time phenotypic plasticity and global adaptation [RESEARCH]

Polymorphic centromere locations in the pathogenic yeast Candida parapsilosis [RESEARCH]

Intragenic repeat expansion in the cell wall protein gene HPF1 controls yeast chronological aging [RESEARCH]

Global fitness landscapes of the Shine-Dalgarno sequence [RESEARCH]

Determining the impact of uncharacterized inversions in the human genome by droplet digital PCR [METHOD]

MEDEA: analysis of transcription factor binding motifs in accessible chromatin [METHOD]

Exploring dimension-reduced embeddings with Sleepwalk [METHOD]

Genome-wide CRISPR screening reveals genes essential for cell viability and resistance to abiotic and biotic stresses in Bombyx mori [METHOD]

CRISPR-Cas9-mediated pinpoint microbial genome editing aided by target-mismatched sgRNAs [METHOD]

Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains [RESOURCES]

Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle [RESOURCES]

Redundant and specific roles of cohesin STAG subunits in chromatin looping and transcriptional control [RESEARCH]

Leveraging mouse chromatin data for heritability enrichment informs common disease architecture and reveals cortical layer contributions to schizophrenia [RESEARCH]

Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology [RESEARCH]

Noncoding regions underpin avian bill shape diversification at macroevolutionary scales [RESEARCH]

Rapid evolution of piRNA-mediated silencing of an invading transposable element was driven by abundant de novo mutations [RESEARCH]

Arabidopsis retrotransposon virus-like particles and their regulation by epigenetically activated small RNA [RESEARCH]

Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing [METHOD]

RETrace: simultaneous retrospective lineage tracing and methylation profiling of single cells [METHOD]

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis [METHOD]

Time course regulatory analysis based on paired expression and chromatin accessibility data [METHOD]

Inhibition of transcription leads to rewiring of locus-specific chromatin proteomes [METHOD]

Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics [METHOD]

Accurate and complete genomes from metagenomes [REVIEW]

Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types [RESEARCH]

Alternative polyadenylation drives oncogenic gene expression in pancreatic ductal adenocarcinoma [RESEARCH]

Identification of FMR1-regulated molecular networks in human neurodevelopment [RESEARCH]

Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism [RESEARCH]

Systems genetics of the Drosophila metabolome [RESEARCH]

Rearrangement of macronucleus chromosomes correspond to TAD-like structures of micronucleus chromosomes in Tetrahymena thermophila [RESEARCH]

Genomic loci susceptible to systematic sequencing bias in clinical whole genomes [METHOD]

Human auditory ossicles as an alternative optimal source of ancient DNA [METHOD]

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities [METHOD]

Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals [METHOD]

Dual threshold optimization and network inference reveal convergent evidence from TF binding locations and TF perturbation responses [METHOD]

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis [RESOURCES]

Gene expression networks in the Drosophila Genetic Reference Panel [RESOURCES]

Integrated annotations and analyses of small RNA-producing loci from 47 diverse plants [RESOURCES]

Corrigendum: Convergent recombination cessation between mating-type genes and centromeres in selfing anther-smut fungi [CORRIGENDUM]

A HOTAIR regulatory element modulates glioma cell sensitivity to temozolomide through long-range regulation of multiple target genes [RESEARCH]

An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa [RESEARCH]

Genome-wide redistribution of 24-nt siRNAs in rice gametes [RESEARCH]

Ancestry-agnostic estimation of DNA sample contamination from sequence reads [METHOD]

netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis [METHOD]

SHARP: hyperfast and accurate processing of single-cell RNA-seq data via ensemble random projection [METHOD]

Deep neural networks for interpreting RNA-binding protein target preferences [METHOD]

MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome [METHOD]

TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance [METHOD]

A comparison of gene expression and DNA methylation patterns across tissues and species [RESOURCES]