Terkko Navigator / Genome Research

Nascent transcript analysis of glucocorticoid crosstalk with TNF defines primary and cooperative inflammatory repression [RESEARCH]

A-to-I RNA editing contributes to the persistence of predicted damaging mutations in populations [RESEARCH]

Global analyses of the dynamics of mammalian microRNA metabolism [RESEARCH]

Cotargeting among microRNAs in the brain [RESEARCH]

The subgenomes show asymmetric expression of alleles in hybrid lineages of Megalobrama amblycephala x Culter alburnus [RESEARCH]

Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ [METHOD]

FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples [METHOD]

Identification and dynamic quantification of regulatory elements using total RNA [METHOD]

SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data [METHOD]

PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data [METHOD]

Quantitative mitochondrial DNA copy number determination using droplet digital PCR with single-cell resolution [METHOD]

Single-pollen-cell sequencing for gamete-based phased diploid genome assembly in plants [METHOD]

Dynamics of microRNA expression during mouse prenatal development [RESOURCES]

Genes essential for embryonic stem cells are associated with neurodevelopmental disorders [RESOURCES]

A chromosome-level assembly of the Atlantic herring genome--detection of a supergene and other signals of selection [RESOURCES]

Pedigree-based estimation of human mobile element retrotransposition rates [RESEARCH]

LTR retroelement expansion of the human cancer transcriptome and immunopeptidome revealed by de novo transcript assembly [RESEARCH]

RNA components of the spliceosome regulate tissue- and cancer-specific alternative splicing [RESEARCH]

Transcriptional alterations in glioma result primarily from DNA methylation-independent mechanisms [RESEARCH]

The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A [RESEARCH]

Sequence determinants of polyadenylation-mediated regulation [RESEARCH]

Widespread cis-regulatory convergence between the extinct Tasmanian tiger and gray wolf [RESEARCH]

Dynamic reversal of random X-Chromosome inactivation during iPSC reprogramming [RESEARCH]

Regional epigenetic differentiation of the Z Chromosome between sexes in a female heterogametic system [RESEARCH]

Fitness benefits of loss of heterozygosity in Saccharomyces hybrids [RESEARCH]

Environmentally induced plasticity of programmed DNA elimination boosts somatic variability in Paramecium tetraurelia [RESEARCH]

RNA-seq as a tool for evaluating human embryo competence [METHOD]

A novel assay to screen siRNA libraries identifies protein kinases required for chromosome transmission [METHOD]

Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks [METHOD]

Exploration of fine-scale recombination rate variation in the domestic horse [RESOURCES]

Decrypting noncoding RNA interactions, structures, and functional networks [PERSPECTIVE]

The 22q11 low copy repeats are characterized by unprecedented size and structural variability [RESEARCH]

Genome-wide analysis of polymerase III-transcribed Alu elements suggests cell-type-specific enhancer function [RESEARCH]

Replication timing networks reveal a link between transcription regulatory circuits and replication timing control [RESEARCH]

Estrogen-independent molecular actions of mutant estrogen receptor 1 in endometrial cancer [RESEARCH]

Targeted delivery of CRISPR interference system against Fabp4 to white adipocytes ameliorates obesity, inflammation, hepatic steatosis, and insulin resistance [RESEARCH]

A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing [RESEARCH]

Distinct types of short open reading frames are translated in plant cells [RESEARCH]

Unique genetic basis of the distinct antibiotic potency of high acetic acid production in the probiotic yeast Saccharomyces cerevisiae var. boulardii [RESEARCH]

Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains [RESEARCH]

Identifying loci under positive selection in complex population histories [METHOD]

Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing [METHOD]

Discovering human transcription factor physical interactions with genetic variants, novel DNA motifs, and repetitive elements using enhanced yeast one-hybrid assays [METHOD]

Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis [METHOD]

Pediatric Cancer Variant Pathogenicity Information Exchange (PeCanPIE): a cloud-based platform for curating and classifying germline variants [RESOURCES]

Corrigendum: A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster [CORRIGENDA]

Corrigendum: Mutational signatures of DNA mismatch repair deficiency in C. elegans and human cancers [CORRIGENDA]

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma [RESEARCH]

Glucocorticoid receptor quaternary structure drives chromatin occupancy and transcriptional outcome [RESEARCH]

Two contrasting classes of nucleolus-associated domains in mouse fibroblast heterochromatin [RESEARCH]