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WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model AlignmentJournal of Computational Biology1 daysaveRefWorksSFX Info
Improvements Achieved by Multiple Imputation for Single-Cell RNA-Seq Data in Clustering Analysis and Differential Expression AnalysisJournal of Computational Biology1 daysaveRefWorksSFX Info
Fast Algorithms for the Simplified Partial Digest ProblemJournal of Computational Biology1 daysaveRefWorksSFX Info
Variational Approximation-Based Model Selection for Microbial Network InferenceJournal of Computational Biology5 dayssaveRefWorksSFX Info
The Probability of Joint Monophyly of Samples of Gene Lineages for All Species in an Arbitrary Species TreeJournal of Computational Biology7 dayssaveRefWorksSFX Info
Mathematical Model of HIV/AIDS Considering Sexual Preferences Under Antiretroviral Therapy, a Case Study in San Juan de Pasto, ColombiaJournal of Computational Biology7 dayssaveRefWorksSFX Info
Cuckoo Search-Based Optimization for Cancer Classification: A New Hybrid ApproachJournal of Computational Biology9 dayssaveRefWorksSFX Info
Data Set-Adaptive Minimizer Order Reduces Memory Usage in <em>k</em>-Mer CountingJournal of Computational Biology9 dayssaveRefWorksSFX Info
A New Context Tree Inference Algorithm for Variable Length Markov Chain Model with Applications to Biological Sequence AnalysesJournal of Computational Biology25 dayssaveRefWorksSFX Info
Genome-Wide Causation Studies of Complex DiseasesJournal of Computational Biology25 dayssaveRefWorksSFX Info
Feature Selection by Hybrid Brain Storm Optimization Algorithm for COVID-19 ClassificationJournal of Computational Biology26 dayssaveRefWorksSFX Info
Harnessing Fuzzy Rule Based System for Screening Major Histocompatibility Complex Class I Peptide Epitopes from the Whole Proteome: An Implementation on the Proteome of <em>Leishmania donovani</em>Journal of Computational Biology36 dayssaveRefWorksSFX Info
Statistical Methods for Microbiome Compositional Data Network Inference: A SurveyJournal of Computational Biology36 dayssaveRefWorksSFX Info
Quantitative Biology Undergraduate Major at the University of Southern CaliforniaJournal of Computational Biology36 dayssaveRefWorksSFX Info
DeepVir: Graphical Deep Matrix Factorization for In Silico Antiviral Repositioning-Application to COVID-19Journal of Computational Biology39 dayssaveRefWorksSFX Info
Special Issue: Biological Distributed Algorithms 2021Journal of Computational Biology40 dayssaveRefWorksSFX Info
Identification of New Clusters from Labeled Data Using Mixture ModelsJournal of Computational Biology42 dayssaveRefWorksSFX Info
On the Number of Saturated and Optimal Extended 2-Regular Simple Stacks in the Nussinov-Jacobson Energy ModelJournal of Computational Biology48 dayssaveRefWorksSFX Info
Texture Enhancement of Medical Images for Efficient Disease Diagnosis with Optimized Fractional Derivative MasksJournal of Computational Biology48 dayssaveRefWorksSFX Info
Agreement in Spiking Neural NetworksJournal of Computational Biology53 dayssaveRefWorksSFX Info
Correlation Imputation for Single-Cell RNA-seqJournal of Computational Biology54 dayssaveRefWorksSFX Info
Use of DFT Distance Metrics for Classification of SARS-CoV-2 GenomesJournal of Computational Biology54 dayssaveRefWorksSFX Info
Integrating Long-Range Regulatory Interactions to Predict Gene Expression Using Graph Convolutional NetworksJournal of Computational Biology54 dayssaveRefWorksSFX Info
Emergence of Direction-Selective Retinal Cell Types in Task-Optimized Deep Learning ModelsJournal of Computational Biology60 dayssaveRefWorksSFX Info
Coordinating Amoebots via Reconfigurable CircuitsJournal of Computational Biology71 dayssaveRefWorksSFX Info
Improvement of Automatic Glioma Brain Tumor Detection Using Deep Convolutional Neural NetworksJournal of Computational Biology76 dayssaveRefWorksSFX Info
A Mathematical Framework for Analyzing Wild Tomato Root ArchitectureJournal of Computational Biology76 dayssaveRefWorksSFX Info
Optimal Solution of a Fractional HIV/AIDS Epidemic Mathematical ModelJournal of Computational Biology77 dayssaveRefWorksSFX Info
Trade-offs of Linear Mixed Models in Genome-Wide Association StudiesJournal of Computational Biology77 dayssaveRefWorksSFX Info
Comparing Phylogenetic Trees Side by Side Through iPhyloC, a New Interactive Web-Based FrameworkJournal of Computational Biology77 dayssaveRefWorksSFX Info
An Upper and Lower Bound for the Convergence Time of House-Hunting in <em>Temnothorax</em> Ant ColoniesJournal of Computational Biology83 dayssaveRefWorksSFX Info
Scalable Species Tree Inference with External ConstraintsJournal of Computational Biology83 dayssaveRefWorksSFX Info
RECOMB 2021 Special IssueJournal of Computational Biology88 dayssaveRefWorksSFX Info
The Statistics of <em>k</em>-mers from a Sequence Undergoing a Simple Mutation Process Without Spurious MatchesJournal of Computational Biology104 dayssaveRefWorksSFX Info
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment MotifsJournal of Computational Biology113 dayssaveRefWorksSFX Info
Uncovering Molecular Mechanisms of Drug Resistance via Network-Constrained Common Structure IdentificationJournal of Computational Biology113 dayssaveRefWorksSFX Info
RECOMB 2021 Special IssueJournal of Computational Biology117 dayssaveRefWorksSFX Info
GRNUlar: A Deep Learning Framework for Recovering Single-Cell Gene Regulatory NetworksJournal of Computational Biology117 dayssaveRefWorksSFX Info
SCOT: Single-Cell Multi-Omics Alignment with Optimal TransportJournal of Computational Biology117 dayssaveRefWorksSFX Info
Acknowledgment of Reviewers 2021Journal of Computational Biology117 dayssaveRefWorksSFX Info
The Power of Population Effect in <em>Temnothorax</em> Ant House-Hunting: A Computational Modeling ApproachJournal of Computational Biology117 dayssaveRefWorksSFX Info
Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to <em>k</em>-Mer AnnotationJournal of Computational Biology117 dayssaveRefWorksSFX Info
flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree PartitioningJournal of Computational Biology119 dayssaveRefWorksSFX Info
Finding Maximal Exact Matches Using the r-IndexJournal of Computational Biology119 dayssaveRefWorksSFX Info
MONI: A Pangenomic Index for Finding Maximal Exact MatchesJournal of Computational Biology119 dayssaveRefWorksSFX Info
Deriving Ranges of Optimal Estimated Transcript Expression due to NonidentifiabilityJournal of Computational Biology119 dayssaveRefWorksSFX Info
Simulating Single-Cell Gene Expression Count Data with Preserved Gene Correlations by scDesign2Journal of Computational Biology125 dayssaveRefWorksSFX Info
Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial RegressionJournal of Computational Biology125 dayssaveRefWorksSFX Info
Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon SamplingJournal of Computational Biology132 dayssaveRefWorksSFX Info
Deep Unfolding for Non-Negative Matrix Factorization with Application to Mutational Signature AnalysisJournal of Computational Biology132 dayssaveRefWorksSFX Info
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