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A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding predictionBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methodsBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
MutEx: a multifaceted gateway for exploring integrative pan-cancer genomic dataBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA–TF–gene network approach in humans and miceBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Heterogeneous information network and its application to human health and diseaseBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
A comprehensive method protocol for annotation and integrated functional understanding of lncRNAsBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Circulating microRNA trafficking and regulation: computational principles and practiceBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platformBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Protein functional annotation of simultaneously improved stability, accuracy and false discovery rate achieved by a sequence-based deep learningBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Location deviations of DNA functional elements affected SNP mapping in the published databases and referencesBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
HiFreSP: A novel high-frequency sub-pathway mining approach to identify robust prognostic gene signaturesBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Some comments on certain statistical aspects of the study of the microbiomeBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained and Competitive MethodsBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Closing the gap between formats for storing layout information in systems biologyBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
A critical review of five machine learning-based algorithms for predicting protein stability changes upon mutationBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Genome-wide functional association networks: background, data & state-of-the-art resourcesBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Consistency and overfitting of multi-omics methods on experimental dataBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Clustering and classification methods for single-cell RNA-sequencing dataBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Data imbalance in CRISPR off-target predictionBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
A survey on identification and quantification of alternative polyadenylation sites from RNA-seq dataBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Machine learning and statistical methods for clustering single-cell RNA-sequencing dataBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Data-driven rational biosynthesis design: from molecules to cell factoriesBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing dataBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
RNA-mediated translation regulation in viral genomes: computational advances in the recognition of sequences and structuresBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Mitochondrial DNA enrichment reduced NUMT contamination in porcine NGS analysesBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
An overview of diffusion models for intracellular dynamics analysisBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
A critical assessment of the feature selection methods used for biomarker discovery in current metaproteomics studiesBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognosesBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Systematic analysis of supervised machine learning as an effective approach to predicateβ-lactam resistance phenotype in Streptococcus pneumoniaeBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
iCircDA-MF: identification of circRNA-disease associations based on matrix factorizationBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
MENDA: a comprehensive curated resource of metabolic characterization in depressionBriefings in Bioinformatics22 dayssaveRefWorksSFX Info
Implementing the FAIR Data Principles in precision oncology: review of supporting initiativesBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impactBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Consistent gene signature of schizophrenia identified by a novel feature selection strategy from comprehensive sets of transcriptomic dataBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Evaluation of different computational methods on 5-methylcytosine sites identificationBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Comparison and integration of computational methods for deleterious synonymous mutation predictionBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Characterization and identification of antimicrobial peptides with different functional activitiesBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Graph convolutional networks for computational drug development and discoveryBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
A comprehensive overview of oncogenic pathways in human cancerBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Transcription factors–DNA interactions in rice: identification and verificationBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence dataBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Genome-wide identification and analysis of the eQTL lncRNAs in multiple sclerosis based on RNA-seq dataBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Comparison of haplotype-based tests for detecting gene–environment interactions with rare variantsBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Single-cell transcriptome-based multilayer network biomarker for predicting prognosis and therapeutic response of gliomasBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
In silico signaling modeling to understand cancer pathways and treatment responsesBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
100 Years of evolving gene–disease complexities and scientific debutantsBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
DNA methylation analysis in plants: review of computational tools and future perspectivesBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Validation strategies for target prediction methodsBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
A feature-based approach to predict hot spots in protein–DNA binding interfacesBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
Molecular Biology Information Service: an innovative medical library-based bioinformatics support service for biomedical researchersBriefings in Bioinformatics80 dayssaveRefWorksSFX Info
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