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Integrative bioinformatics and omics data source interoperability in the next-generation sequencing era—EditorialBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Computational methods for the integrative analysis of single-cell dataBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Structured sparsity regularization for analyzing high-dimensional omics dataBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Comparison of microbiome samples: methods and computational challengesBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Epidemiological data analysis of viral quasispecies in the next-generation sequencing eraBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Using conceptual modeling to improve genome data managementBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
The road towards data integration in human genomics: players, steps and interactionsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Corrigendum to: Bioinformatics: scalability, capabilities and training in the data-driven eraBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Corrigendum to: Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequencesBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Erratum to: Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulationsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasetsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulationsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Toward a gold standard for benchmarking gene set enrichment analysisBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Corrigendum to: Computational annotation of miRNA transcription start sitesBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Closing the gap between formats for storing layout information in systems biologyBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Erratum to: Machine learning approaches and databases for prediction of drug–target interaction: a survey paperBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Meta-Prism: Ultra-fast and highly accurate microbial community structure search utilizing dual indexing and parallel computationBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
High-dimensional variable selection for ordinal outcomes with error controlBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Systematical identification of cell-specificity of CTCF-gene binding based on epigenetic modificationsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Human body-fluid proteome: quantitative profiling and computational predictionBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
GCdiscrimination: identification of gastric cancer based on a milliliter of bloodBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Domain-specific introduction to machine learning terminology, pitfalls and opportunities in CRISPR-based gene editingBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotesBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Deep learning-based clustering approaches for bioinformaticsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
A network-based algorithm for the identification of moonlighting noncoding RNAs and its application in sepsisBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Computational annotation of miRNA transcription start sitesBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Closing the circle: current state and perspectives of circular RNA databasesBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Erratum to: LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptorBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Design powerful predictor for mRNA subcellular location prediction in Homo sapiensBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
CpG-island-based annotation and analysis of human housekeeping genesBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Can machine learning consistently improve the scoring power of classical scoring functions? Insights into the role of machine learning in scoring functionsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Erratum to: Molecular dynamics simulations for genetic interpretation in protein coding regions: where we are, where to go and whenBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Deep learning for drug response prediction in cancerBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Structural dynamics and allostery of Rab proteins: strategies for drug discovery and designBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Machine learning approaches and databases for prediction of drug–target interaction: a survey paperBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
NCMCMDA: miRNA–disease association prediction through neighborhood constraint matrix completionBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
A survey and systematic assessment of computational methods for drug response predictionBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing referencesBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutationBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Drug–target prediction utilizing heterogeneous bio-linked network embeddingsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
BioMedR: an R/CRAN package for integrated data analysis pipeline in biomedical studyBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencingBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiaeBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid featuresBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Deep learning for mining protein dataBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Current challenges and best-practice protocols for microbiome analysisBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
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An extensive review of tools for manual annotation of documentsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
A survey on adverse drug reaction studies: data, tasks and machine learning methodsBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
Improving drug response prediction by integrating multiple data sources: matrix factorization, kernel and network-based approachesBriefings in Bioinformatics81 dayssaveRefWorksSFX Info
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