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Terkko 2005-2021
Integrative bioinformatics and omics data source interoperability in the next-generation sequencing era—Editorial
Briefings in Bioinformatics
21 hours
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Computational methods for the integrative analysis of single-cell data
Briefings in Bioinformatics
21 hours
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Structured sparsity regularization for analyzing high-dimensional omics data
Briefings in Bioinformatics
21 hours
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Comparison of microbiome samples: methods and computational challenges
Briefings in Bioinformatics
21 hours
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Epidemiological data analysis of viral quasispecies in the next-generation sequencing era
Briefings in Bioinformatics
21 hours
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Using conceptual modeling to improve genome data management
Briefings in Bioinformatics
21 hours
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The road towards data integration in human genomics: players, steps and interactions
Briefings in Bioinformatics
21 hours
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Corrigendum to: Bioinformatics: scalability, capabilities and training in the data-driven era
Briefings in Bioinformatics
21 hours
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Corrigendum to: Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences
Briefings in Bioinformatics
21 hours
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Erratum to: Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations
Briefings in Bioinformatics
21 hours
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GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets
Briefings in Bioinformatics
21 hours
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Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations
Briefings in Bioinformatics
21 hours
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Toward a gold standard for benchmarking gene set enrichment analysis
Briefings in Bioinformatics
21 hours
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Corrigendum to: Computational annotation of miRNA transcription start sites
Briefings in Bioinformatics
21 hours
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Closing the gap between formats for storing layout information in systems biology
Briefings in Bioinformatics
21 hours
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Erratum to: Machine learning approaches and databases for prediction of drug–target interaction: a survey paper
Briefings in Bioinformatics
21 hours
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Meta-Prism: Ultra-fast and highly accurate microbial community structure search utilizing dual indexing and parallel computation
Briefings in Bioinformatics
21 hours
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High-dimensional variable selection for ordinal outcomes with error control
Briefings in Bioinformatics
21 hours
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Systematical identification of cell-specificity of CTCF-gene binding based on epigenetic modifications
Briefings in Bioinformatics
21 hours
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Human body-fluid proteome: quantitative profiling and computational prediction
Briefings in Bioinformatics
21 hours
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GCdiscrimination: identification of gastric cancer based on a milliliter of blood
Briefings in Bioinformatics
21 hours
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Domain-specific introduction to machine learning terminology, pitfalls and opportunities in CRISPR-based gene editing
Briefings in Bioinformatics
21 hours
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EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes
Briefings in Bioinformatics
21 hours
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Deep learning-based clustering approaches for bioinformatics
Briefings in Bioinformatics
21 hours
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A network-based algorithm for the identification of moonlighting noncoding RNAs and its application in sepsis
Briefings in Bioinformatics
21 hours
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Computational annotation of miRNA transcription start sites
Briefings in Bioinformatics
21 hours
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Closing the circle: current state and perspectives of circular RNA databases
Briefings in Bioinformatics
21 hours
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Erratum to: LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor
Briefings in Bioinformatics
21 hours
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Design powerful predictor for mRNA subcellular location prediction in Homo sapiens
Briefings in Bioinformatics
21 hours
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CpG-island-based annotation and analysis of human housekeeping genes
Briefings in Bioinformatics
21 hours
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Can machine learning consistently improve the scoring power of classical scoring functions? Insights into the role of machine learning in scoring functions
Briefings in Bioinformatics
21 hours
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Erratum to: Molecular dynamics simulations for genetic interpretation in protein coding regions: where we are, where to go and when
Briefings in Bioinformatics
21 hours
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Deep learning for drug response prediction in cancer
Briefings in Bioinformatics
21 hours
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Structural dynamics and allostery of Rab proteins: strategies for drug discovery and design
Briefings in Bioinformatics
21 hours
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Machine learning approaches and databases for prediction of drug–target interaction: a survey paper
Briefings in Bioinformatics
21 hours
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NCMCMDA: miRNA–disease association prediction through neighborhood constraint matrix completion
Briefings in Bioinformatics
21 hours
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A survey and systematic assessment of computational methods for drug response prediction
Briefings in Bioinformatics
21 hours
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SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references
Briefings in Bioinformatics
21 hours
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On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation
Briefings in Bioinformatics
21 hours
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Drug–target prediction utilizing heterogeneous bio-linked network embeddings
Briefings in Bioinformatics
21 hours
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BioMedR: an R/CRAN package for integrated data analysis pipeline in biomedical study
Briefings in Bioinformatics
21 hours
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Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing
Briefings in Bioinformatics
21 hours
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Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae
Briefings in Bioinformatics
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DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features
Briefings in Bioinformatics
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Deep learning for mining protein data
Briefings in Bioinformatics
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Current challenges and best-practice protocols for microbiome analysis
Briefings in Bioinformatics
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Hybrid modelling of biological systems using fuzzy continuous Petri nets
Briefings in Bioinformatics
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An extensive review of tools for manual annotation of documents
Briefings in Bioinformatics
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A survey on adverse drug reaction studies: data, tasks and machine learning methods
Briefings in Bioinformatics
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Improving drug response prediction by integrating multiple data sources: matrix factorization, kernel and network-based approaches
Briefings in Bioinformatics
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