Terkko Navigator / Briefings in Bioinformatics

A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction

Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods

MutEx: a multifaceted gateway for exploring integrative pan-cancer genomic data

Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA–TF–gene network approach in humans and mice

Heterogeneous information network and its application to human health and disease

A comprehensive method protocol for annotation and integrated functional understanding of lncRNAs

Circulating microRNA trafficking and regulation: computational principles and practice

New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform

Protein functional annotation of simultaneously improved stability, accuracy and false discovery rate achieved by a sequence-based deep learning

Location deviations of DNA functional elements affected SNP mapping in the published databases and references

HiFreSP: A novel high-frequency sub-pathway mining approach to identify robust prognostic gene signatures

Some comments on certain statistical aspects of the study of the microbiome

Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained and Competitive Methods

Closing the gap between formats for storing layout information in systems biology

A critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation

Genome-wide functional association networks: background, data & state-of-the-art resources

Consistency and overfitting of multi-omics methods on experimental data

Clustering and classification methods for single-cell RNA-sequencing data

Data imbalance in CRISPR off-target prediction

A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data

Machine learning and statistical methods for clustering single-cell RNA-sequencing data

Data-driven rational biosynthesis design: from molecules to cell factories

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data

RNA-mediated translation regulation in viral genomes: computational advances in the recognition of sequences and structures

Mitochondrial DNA enrichment reduced NUMT contamination in porcine NGS analyses

An overview of diffusion models for intracellular dynamics analysis

A critical assessment of the feature selection methods used for biomarker discovery in current metaproteomics studies

Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses

Systematic analysis of supervised machine learning as an effective approach to predicateβ-lactam resistance phenotype in Streptococcus pneumoniae

iCircDA-MF: identification of circRNA-disease associations based on matrix factorization

MENDA: a comprehensive curated resource of metabolic characterization in depression

Implementing the FAIR Data Principles in precision oncology: review of supporting initiatives

PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact

Consistent gene signature of schizophrenia identified by a novel feature selection strategy from comprehensive sets of transcriptomic data

Evaluation of different computational methods on 5-methylcytosine sites identification

Comparison and integration of computational methods for deleterious synonymous mutation prediction

Characterization and identification of antimicrobial peptides with different functional activities

Graph convolutional networks for computational drug development and discovery

A comprehensive overview of oncogenic pathways in human cancer

Transcription factors–DNA interactions in rice: identification and verification

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data

Genome-wide identification and analysis of the eQTL lncRNAs in multiple sclerosis based on RNA-seq data

Comparison of haplotype-based tests for detecting gene–environment interactions with rare variants

Single-cell transcriptome-based multilayer network biomarker for predicting prognosis and therapeutic response of gliomas

In silico signaling modeling to understand cancer pathways and treatment responses

100 Years of evolving gene–disease complexities and scientific debutants

DNA methylation analysis in plants: review of computational tools and future perspectives

Validation strategies for target prediction methods

A feature-based approach to predict hot spots in protein–DNA binding interfaces

Molecular Biology Information Service: an innovative medical library-based bioinformatics support service for biomedical researchers