Table of Contents

Modeling, Simulation, and Meaning of Gene Networks. Network Analysis to Interpret Complex Phenotypes / Hong Yu, Jialiang Huang, Wei Zhang, Jing-Dong J Han.
Stochastic Modeling of Gene Regulatory Networks / Tianhai Tian.
Modeling Expression Quantitative Trait Loci in Multiple Populations / Ching-Lin Hsiao, Cathy S J Fann.
Inference of Gene Networks. Transcriptional Network Inference Based on Information Theory / Patrick E Meyer, Catharina Olsen, Gianluca Bontempi.
Elucidation of General and Condition-Dependent Gene Pathways Using Mixture Models and Bayesian Networks / Sandra Rodriguez-Zas, Younhee Ko.
Multiscale Network Reconstruction from Gene Expression Measurements: Correlations, Perturbations, and "Biological Knowledge" / Daniel Remondini, Gastone Castellani.
Gene Regulatory Networks Inference: Combining a Genetic Programming and Filtering Approach / Lijun Qian, Haixin Wang, Xiangfang Li.
Computational Reconstruction of Protein Interaction Networks / Konrad Monks, Irmgard Muhlberger, Andreas Bernthaler, Raul Fechete, Paul Perco, Rudolf Freund, Arno Lukas, Bernd Mayer.
Analysis of Gene Networks. What if the Fit is Unfit? Criteria for Biological Systems Estimation beyond Residual Errors / Eberhard O Voit.
Machine Learning Methods for Identifying Essential Genes and Proteins in Networks / Kitiporn Plaimas, Rainer Konig.
Gene Coexpression Networks for the Analysis of DNA Microarray Data / Matthew T Weirauch.
Correlation Network Analysis and Knowledge Integration / Thomas N Plasterer, Robert Stanley, Erich Gombocz.
Network Screening: A New Method to Identify Active Networks from an Ensemble of Known Networks / Shigeru Saito, Katsuhisa Horimoto.
Community Detection in Biological Networks / Gautam S Thakur.
On Some Inverse Problems in Generating Probabilistic Boolean Networks / Xi Chen, Wai-Ki Ching, Nam-Kiu Tsing.
Boolean Analysis of Gene Expression Datasets / Debashis Sahoo.
Systems Approach to Diseases. Representing Cancer Cell Trajectories in a Phase-Space Diagram: Switching Cellular States by Biological Phase Transitions / Mariano Bizzarri, Alessandro Giuliani.
Protein Network Analysis for Disease Gene Identification and Prioritization / Jing Chen, Anil G Jegga.
Pathways and Networks as Functional Descriptors for Human Disease and Drug Response Endpoints / Yuri Nikolsky, Marina Bessarabova, Eugene Kirillov, Zoltan Dezso, Weiwei Shi, Tatiana Nikolskaya.